CNTK : Different mini-batch size detected
Size of your test data and train data differs. Try making it the same before running your code again.
git subtree add gives you "Working tree has modifications. Cannot add"
While seems confusing, i think it is pretty clear it meant what it says. If you have any changes, please commit or stash it - make sure your branch is clean and neat :) Or sometimes if you don't have any modification, just run the command "git reset". And re-run the command.
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